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Studies of Oat-Maize Hybrids Tolerance to Soil Drought Stress
The ontogenesis and yield formation in crop plants are modified by environmental conditions. Due to climatic change detected over two decades, the harmful influence of abiotic factors is increasing. One of the most threatening issues reducing plant productivity is drought stress. The strength of plant response to water shortages could differ depending on the strength of the drought stress, type of crop, genetic background, presence of additional stresses, and stage of plant development. There are examples of sexual hybridization between crop plants like oat (Avena sativa L.) and maize (Zea mays L.) with which stable fertile hybrids were generated. Additional maize chromosomes in oat plants (oat × maize addition, OMA) often infer morphological and physiological (e.g., PS II photosystem activity and chlorophyll production) changes modulated by the interaction of certain maize chromosomes added to the oat genome. The aim of the research was to evaluate the chosen physiological, biochemical, and agronomic parameters of OMA plants subjected to soil drought. Analysis of variance indicated that the main effects of genotype as well as treatment × genotype interaction were significant for all the traits studied (photosynthetic pigment content, selected PSII indices, mass of stem, number of grains/plant, mass of grains/plant). Most of the examined lines severely reduced PSII photosystem parameters, pigment content, and yield-related traits under drought stress. The results indicated that two lines (9 and 78b) retained high yielding potential under drought stress compared to commercial cv. Bingo.
Effect of cover crops and soil tillage methods for sowing spring wheat (Triticum aestivum L.) on selected soil physical properties
A dataset for revealing the potential of inter-primer binding site (iPBS), Start codon-targeted (SCoT), and CAAT box-derived polymorphism (CBDP) in exploring genetic diversity and grouping the plant genetic materials: A case study in Aegilops tauschii populations
Badania wpływu wybranych insektycydów na zachowanie trzmiela ziemnego (Bombus terrestris L.) na kwitnącej facelii błękitnej i rzepaku ozimym
Assessment of the virulence level of powdery mildew populations affecting grains and grasses in Poland during 2015–2017
The Effects of Lead and Cross-Talk Between Lead and Pea Aphids on Defence Responses of Pea Seedlings
The main goal of this study was to investigate the effect of lead (Pb) at various concentrations, as an abiotic factor, and the cross-talk between Pb and pea aphid (Acyrthosiphon pisum (Harris)) (Hemiptera: Aphididae), as a biotic factor, on the defence responses of pea seedlings (Pisum sativum L. cv. Cysterski). The analysis of growth parameters for pea seedlings demonstrated that Pb at a low concentration, i.e., 0.025–0.0625 mM Pb(NO3)2, caused a hormesis effect, i.e., stimulation of seedling growth, whereas Pb at higher concentrations, i.e., 0.01–0.325 mM Pb(NO3)2, inhibited growth, which manifested as the inhibition of length and fresh biomass. The differences in the level of the main defence-related phytohormones, such as abscisic acid (ABA), jasmonic acid (JA) and salicylic acid (SA), and indole-3-acetic acid (IAA)—an auxin stimulating plant cell growth—depended on the dose of Pb, aphid infestation and direct contact of the stress factor with the organ. A high accumulation of soluble sugars in the organs of pea seedlings both at sublethal doses and hormetic doses at early experimental time points was observed. At 0 h and 24 h of the experiment, the hormetic doses of Pb significantly stimulated invertase activities, especially in the roots. Moreover, an increase was observed in the pisatin concentration in pea seedlings growing in the presence of different concentrations of Pb and in the case of cross-talk between Pb and A. pisum in relation to the control. Additionally, a significant induction of the expressions of isoflavone synthase (IFS) and 6α-hydroxymaackiain 3-O-methyltransferase (HMM) genes, which participate in the regulation of the pisatin biosynthesis pathway, in pea seedlings growing under the influence of sublethal 0.5 mM Pb(NO3)2 and hormetic 0.075 mM Pb(NO3)2 doses of Pb was noted. The obtained results showed that the response of P. sativum seedlings depends on the Pb dose applied, direct contact of the stress factor with the organ and the duration of contact.
Genetic diversity and genetic structure of alfalfa (Medicago sativa L.) genotypes as revealed by Start Codon Targeted (SCoT) markers
A Framework for Selection of High-Yielding and Drought-tolerant Genotypes of Barley: Applying Yield-Based Indices and Multi-index Selection Models
The Use of DArTseq Technology to Identify Markers Linked to Genes Responsible for Seed Germination and Seed Vigor in Maize
Seed vigor and seed germination are very important traits, determined by several factors including genetic and physical purity, mechanical damage, and physiological condition, characterized by maintaining a high seed vigor and stable content after storage. The search for molecular markers related to improvement in seed vigor under adverse condition is an important issue in maize breeding currently. Higher sowing quality of seeds is necessary for the development of the agriculture production and better ability to resist all kinds of adversity in the seeds’ storage. Condition is a very important factor affecting the yield of plants, thanks to the construction of their vitality. Identification of molecular markers associated with seed germination and seed vigor may prove to be very important in the selection of high-yielding maize varieties. The aim of this study was to identify and select new markers for maize (SNP and SilicoDArT) linked to genes influencing the seed germination and seed vigor in inbred lines of maize (Zea mays L.). The plant material used for the research was 152 inbred maize lines. The seed germination and seed vigor were analyzed. For identification of SNP and SilicoDArT markers related to the seed germination and seed vigor, the SilicoDarT technique developed by Diversity Arrays Technology was used. The analysis of variance indicated a statistically significant differentiation between genotypes for both observed traits. Positive (r = 0.41) correlation (p < 0.001) between seed germination and seed vigor was observed. As a result of next-generation sequencing, the molecular markers SilicoDArT (53,031) and SNP (28,571) were obtained. Out of 81,602 identified SilicoDArT and SNP markers, 15,409 (1559 SilicoDArT and 13,850 SNP) were selected as a result of association mapping, which showed them to be significantly related to the analyzed traits. The 890 molecular markers were associated with seed vigor, and 1323 with seed germination. Fifty-six markers (47 SilicoDArT and nine SNP) were significant for both traits. Of these 56 markers, the 20 most significant were selected (five of these markers were significant at the level of 0.001 for seed vigor and at the level of 0.05 for seed germination, another five markers were significant at the level of 0.001 for seed germination and at the level of 0.05 for seed vigor, five markers significant at the level of 0.001 only for seed vigor and five significant at the level of 0.001 only for seed germination also selected). These markers were used for physical mapping to determine their location on the genetic map. Finally, it was found that six of these markers (five silicoDArT—2,435,784, 4,772,587, 4,776,334, 2,507,310, 25,981,291, and one SNP—2,386,217) are located inside genes, the action of which may affect both seed germination and seed vigor. These markers can be used to select genotypes with high vigor and good seed germination.
Plonowanie odmian pszenżyta ozimego w warunkach klimatyczno-glebowych Wielkopolski
Since Poland has joined the structures of the European Union (EU), legal regulations at the EU level allow marketing of plant varieties registered in any country of the community. As part of the Post Registration Variety Trials (PRVT) in the Wielkopolska (Greater Poland) voivodeship, the analysis of the interaction of winter triticale cultivars for: height, lodging, diseases, yield and thousand kernel weight in growing seasons 2017–2019 was performed. For farmers, the most important and valuable effect of the research conducted in the PRVT system is the annual “List of varieties recommended for cultivation in the voivodeship”. The main purpose of PRVT research is to help farmers in accurate selection/choice of the most valuable varieties for cultivation, adapted to local conditions. This type of research provides users with continuous information about the variety value for cultivation and use, including their reaction to various agrotechnical factors.
CAAT box-derived polymorphism (CBDP) marker system exhibited a clear classification pattern in a global mini core collection of Aegilops tauschii Coss. populations
Does the Reaction of Inflorescences and Flowers of the Invasive Prunus serotina Ehrh. to Various Herbicides Give Hope for Elimination of This Species from Polish Forests?
Evaluation of genetic diversity of two-row barley by tissue culture potential
Abstract This study examined tissue culture responses and genetic variability among 25 two-row barley genotypes preserved in the Osman Tosun Gene Bank, including both Türkiye landraces and foreign-origin genotypes, with the objective of optimizing genetic resources for barley breeding programs. Key tissue culture parameters – callus induction rate, callus weight, regeneration capacity, and culture efficiency—were evaluated to access how diversity of genotypes influences tissue culture outcomes. Results revealed significant variation across all traits. Genotypes 77 and 1972 achieved the highest callus induction rates (100%), while genotype Zeynelağa exhibited the lowest (57.5%). Genotype 417 showed superior regeneration capacity (81.9%), and culture efficiency was highest in genotypes Standard Cultivar 138 (90.0%) and 1972 (70.0%). Principal Component Analysis (PCA) indicated that the first two principal components accounted for 87.84% of the variance in tissue culture responses, providing valuable insights into genotype relationships and trait performance. Hierarchical clustering analysis revealed four distinct groups, with Cluster 1 displaying the highest mean performance across traits. Collectively, these findings underscore the role of diversity of genotypes in enhancing tissue culture efficiency and plant regeneration. High-performing genotypes, including 77, 1972, 417, and standard cultivar 138, show considerable promise for biotechnological applications and future barley crop improvement initiatives.
Identification and Analysis of Candidate Genes Associated with Maize Fusarium Cob Resistance Using Next-Generation Sequencing Technology
The pressure to reduce mineral fertilization and the amount of pesticides used has become a factor limiting production growth, as has the elimination of many crop protection chemicals from the market. A key condition for this to be an effective form of protection is the use of varieties with higher levels of resistance. The most effective and fastest way to assist in the selection and control of pathogens is the conducting of genome-wide association studies. These are useful tools for identifying candidate genes, especially when combined with QTL mapping to map and validate loci for quantitative traits. The aim of this study was to identify new markers coupled to genes that determine maize plant resistance to fusarium head blight through the use of next-generation sequencing, association and physical mapping, and to optimize diagnostic procedures to identify selected molecular markers coupled to plant resistance to this fungal disease. As a result of field experiments and molecular analyses, molecular markers coupled to potential genes for resistance to maize ear fusariosis were selected. The newly selected markers were tested against reference genotypes. As a result of the analyses, it was found that two markers (11801 and 20607) out of the ten that were tested differentiated between susceptible and resistant genotypes. Marker number 11801 proved to be the most effective, with a specious product of 237 bp appearing for genotypes 1, 3, 5, 9 and 10. These genotypes were characterized by a field resistance of 4–6 on the 9° scale (1 being susceptible, 9 being resistant) and for all genotypes except 16 and 20, which were characterized by a field resistance of 9. In the next step, this marker will be tested on a wider population of extreme genotypes in order to use it for the preliminary selection of fusarium-resistant genotypes, and the phosphoenolpyruvate carboxylase kinase 1 gene coupled to it will be subjected to expression analysis.
Combined Biological and Chemical Control of Sclerotinia sclerotiorum on Oilseed Rape in the Era of Climate Change
This study investigates the biocontrol potential of Trichoderma asperellum and Coniothyrium minitans against the pathogen Sclerotinia sclerotiorum, which causes yield losses in many plants, including oilseed rape (Brassica napus) cultivation. This research emphasizes the promising alternative of hybrid control, specifically using T. asperellum and C. minitans in strategy with synthetic fungicides. In vitro experiments demonstrated that T. asperellum effectively inhibited S. sclerotiorum mycelial growth, especially when combined with synthetic fungicides such as azoxystrobin. Field trials conducted over two years revealed that pre-sowing applications of T. asperellum and C. minitans, followed by fungicide treatments during the flowering stage, significantly reduced plant infection rates and improved both yield and seed quality across different oilseed rape cultivars. The results indicated an efficacy range of 81% to 100% in controlling the pathogen and highlighted the synergistic effects of combining biological and chemical controls. Overall, the research findings support the integration of T. asperellum and C. minitans into sustainable agricultural practices for oilseed rape, offering a viable strategy to enhance disease management while reducing reliance on chemical fungicides. This research underscores the importance of adopting innovative biocontrol approaches to improve crop health and productivity.
Effect of Vicia sativa L. on Motility, Mortality and Expression Levels of hsp Genes in J2 Stage of Meloidogyne hapla
Abstract Assuming that the seeds of Vicia sativa L. have a stressful effect on J2 stage Meloidogyne hapla, we undertook research on the effect of these seeds on the motility and mortality of J2 and determined the expression levels of selected hsp genes in J2. The assessment of the effect of V. sativa seeds on the motility of M. hapla specimens consisted of observing the movement of J2 immersed in a seed diffusate or in a tomato root filtrate at temperatures of 10, 17, and 21°C. In J2 treated with V. sativa (cv. Ina) seed diffusates, the expression level of hsp genes was determined by qPCR. J2 exposed to V. sativa diffusates were found to lose their motility, while their mortality did not exceed 30%. J2 in the seed diffusate were characterized by an increase in the expression levels of the Mh-hsp90, Mh-hsp1, and Mh-hsp43 genes. It is suggested that the hsp90 gene may be a potential bioindicator of the environmental impact on Meloidogyne nematodes. The impaired ability to move in J2 of M. hapla is attributable to the occurrence of V. sativa seeds in their habitat. These studies may contribute to developing methods of reducing crop damage caused by M. hapla.
Maltodextrin-Coated Peppermint and Caraway Essential Oils Effects on Soil Microbiota
Essential oils exhibit strong antimicrobial effects that can serve as a substitute for synthetic pesticides. However, many reports mention the use of essential oils in protecting above-ground plant organs and storing raw materials and seeds, but only a few address the effects of treatments on soil microbiota. Regarding this, it is necessary to find a solution that will prevent the rapid degradation of oils in soil and extend the period of their action on the soil microbiota. The solution to this problem can be microencapsulation, where the choice of carrier plays a key role. In our experiment, maltodextrin was studied, often used in the microencapsulation of essential oils. It was examined independently in two doses (M1 and M2, with 50 and 200 g kg−1, respectively) and a combination with two essential oils known for their antimicrobial activity. We hypothesized that the selected microbial communities would react differently to the stress caused by maltodextrin-encapsulated essential oils. The serial dilution method assessed the number of colony-forming units (CFU) of bacteria, fungi, and actinomycetes. As the goal of microencapsulation was to prolong the effect of essential oils, their reaction was observed over a longer period. The soil microbial populations were examined in sandy and loamy soil at 1, 7, 14, and 78 days after encapsulated essential oils were mixed with the soil samples. In both types of soil, a significant increase in bacteria and actinomycetes was observed with maltodextrin in both doses. Encapsulated peppermint and caraway oils had different effects on microbes, both inhibitory and stimulatory. It is also important to note that peppermint with a smaller dose of maltodextrin significantly inhibited the growth of fungi in sandy soil in all measurements, as well as that caraway oil with a higher dose of maltodextrin significantly stimulated the growth of bacteria and actinomycetes in sandy soil. The higher dose of maltodextrin could explain this stimulation. Further research is recommended to test different doses of essential oils and maltodextrin, which would lead to the optimal dose of both wall and core materials.
Using Genome-Wide Association Studies to Reveal DArTseq and SNP Loci Associated with Agronomic Traits and Yield in Maize
Next-generation sequencing (NGS) has revolutionized genetic research, enabling the massive, rapid, and relatively inexpensive analysis of the genomes, transcriptomes, and epigenomes of various organisms, including maize. Therefore, this paper uses NGS, association mapping, and physical mapping to identify candidate genes associated with yield structure traits and yield in maize (Zea mays L.). Furthermore, expression analysis of selected candidate genes was performed to confirm their contribution to yield formation. The plant material used for the study was 186 F1 hybrids and 20 reference genotypes (high-yielding and low-yielding). Field experiments were conducted simultaneously in two locations (in Smolice and Kobierzyce). NGS yielded a total of 45,876 molecular markers (24,437 SilicoDArT markers and 21,439 SNP markers) relevant to yield and crop structure. The largest number of markers in both localities (Smolice and Kobierzyce) was related to: the number of grain rows (6960), dry matter content after harvest (6616), the number of grains in a row (6721), mass of grain from the cob (6616), and cob length (6564). The smallest number of markers in both localities was related to yield (t ha−1) (1114) and yield from the plot (1237). To narrow down the number of markers for physical mapping, ten were selected from all the significant ones associated with the same traits in both localities (Kobierzyce and Smolice). Significant markers included eight silicoDArT markers (459199, 2447305, 4768759, 4579916, 4764335, 2448946, 2492509, 4774802) and two SNP markers (9692004, 5587791). These markers were used for physical mapping. These markers are located on chromosomes 7, 8, and 10. Some of these markers are located at a considerable distance from characterized genes or within uncharacterized genes. Two markers caught our attention: SNP 5587791 and silicoDArT 4774802. The first one is located on chromosome 8 inside exon 5 of the LOC100383455 U-box domain-containing protein 7 gene, the second marker is also located on chromosome 8 near (300 bp) the LOC103635953 putative WUSCHEL-related homeobox 2 protein gene. Our own research and literature reports indicate the usefulness of next-generation sequencing, association mapping, and physical mapping for identifying candidate genes associated with economically important traits in maize. Furthermore, two genes characterized in detail in the publication, LOC100383455 U-box domain-containing protein 7 gene and LOC103635953 putative WUSCHEL-related homeobox 2 protein gene, may be involved in processes related to maize yield.
Transcriptomic Characterization of Genes Harboring Markers Linked to Maize Yield
Background: It is currently believed that breeding priorities, including maize breeding, should focus on introducing varieties with greater utility value, specifically higher yields, into production. Global modern maize breeding relies on various molecular genetics techniques. Using the above mentioned technologies, we can identify regions of the genome that are associated with various phenotypic traits, including yield, which is of fundamental importance for understanding and manipulating these regions. Objectives: The aim of the study was to analyze the expression of candidate genes associated with maize yield. To better understand the function of the analyzed genes in increasing maize yield, their expression in different organs and tissues was also assessed using publicly available transcriptome data. Methods: RT-qPCR analyses were performed using iTaq Universal SYBR Green Supermix (Bio-Rad, Hercules, CA, USA) and CFX96 Touch Real-Time PCR Detection System (Bio-Rad, Hercules, CA, USA). Each of the performed RT-qPCR experiments consisted of three biological replicates and three technical replicates, the results of which were averaged. Results: The research results allowed us to select three out of six candidate genes (cinnamoyl-CoA reductase 1—CCR1, aspartate aminotransferase—AAT and sucrose transporter 1—SUT1), which can significantly affect grain yield in maize. Not only our studies but also literature reports clearly indicate the participation of CCR1, AAT and SUT1 in the formation of yield. Identified molecular markers located within these genes can be used in breeding programs to select high yielding maize genotypes.
The Response of the Mycobiome to the Biofumigation of Replanted Soil in a Fruit Tree Nursery
In a long-term monoculture with fruit trees and tree nurseries, it is necessary to regenerate the soil due to the risk of apple replant disease (ARD). The occurrence of ARD is manifested in the structure of the mycobiome. The assumption of our experiment was that the use of oil radish (Raphanus sativus var. oleifera), white mustard (Sinapis alba), and marigold (Tagetes patula L.) as phytosanitary plants for biofumigation would provide crops with nutrients, improve soil physicochemical properties, and influence the diversity of microbiota, including fungal networks, towards a beneficial mycobiome. Metagenomic analysis of fungal populations based on the hypervariable ITS1 region was used for assessing changes in the soil mycobiome. It showed that biofumigation, mainly with a forecrop of marigold (Tagetes patula L.) (R3), caused an improvement in soil physicochemical properties (bulk density and humus) and the highest increase in the abundance of operational taxonomic units (OTUs) of the Fungi kingdom, which was similar to that of agriculturally undegraded soils, and amounted to 54.37%. In this variant of the experiment, the most OTUs were identified at the phylum level, for Ascomycota (39.82%) and Mortierellomycota beneficial fungi (7.73%). There were no such dependencies in the soils replanted with forecrops of oilseed radish (Raphanus sativus var. oleifera) and white mustard (Sinapis alba). Biofumigation with marigold and oil radish contributed to a reduction in the genus Fusarium, which contains several significant plant-pathogenic species. The percentages of operational taxonomic units (OTUs) of Fusarium spp. decreased from 1.57% to 0.17% and 0.47%, respectively.
