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The community of soil fungi associated with the western red cedar (Thuja plicata Donn ex D. Don, 1824)
ABSTRACT The western red cedar (Thuja plicata Donn ex D. Don), an important forest-forming species in the Western part of the North American continent, is an alien species naturalised in Europe. It is popular and highly valued in horticulture. While considering the progressing climate change, it may also be a potential alternative to native species in European forests. The community of soil fungi associated with the western red cedar in forested areas of Europe has not been fully determined. Thus, this study is aimed to identify the community of soil fungi associated with the western red cedar. The experimental plots are located in the Kościan Forest District (51°98’87″ N; 16°23’54″ E). All soil samples were taken from the topsoil layer at a depth of 25 cm with a trowel, three from the centre of natural regeneration (1G, 2G, 5G) and three from the centre stand under the canopy of old-growth western red cedar (3G, 4G, 6G). Fungi were identified directly from the soil based on the ITS1 rDNA region. The derived product was sequenced using Illumina’s sequencing by synthesis (SBS) technology. Sequences were referred to the National Center for Biotechnology Information (NCBI) database applying the BLAST algorithm. The fungal counts were defined based on the number of operational taxonomic units (OTU) in the sample. The OTU number was 835 206, with fungal isolates accounting for 683 095 (81.79%). A total of 8 591 taxa belonging to the Kingdom Fungi were identified. The species with the greatest shares in the community included Mortierella spp. (10.5%), Russula spp. (5.6%), Hydnum spp. (3.44%), Solicoccozyma spp. (3.1%) and Penicillium spp. (2.2%). Results showed that saprotrophs and mycorrhizal fungi predominated in the community. The dominance of ectomycorrhizal fungi over arbuscular ones, quite impressive natural regeneration was shown in T. plicata stands in Kościan. Subsequent research should take into account tree stands in Poland in which natural regeneration does not occur or occurs sporadically.
Mycobiome of Post-Agricultural Soils 20 Years after Application of Organic Substrates and Planting of Pine Seedlings
A 20-year study of a pine stand on post-agricultural land showed that woody debris in the form of organic matter can be successfully used to restore symbiotic mycorrhizal communities, as is the case with forest soils. Woody substrates restored organic matter in soils altered by long agricultural use and had a positive effect on the composition of mycobiota antagonistic to pathogens, especially to Heterobasidion annosum, the causal agent of the dangerous disease root and stump rot of many forest tree species, including stands of Pinus sylvestris (L.). In a study that started in 2001 in the forest district of Czarne Człuchowskie (northern Poland), the following organic materials were used: wood residues (W), sawdust (S), bark compost (B), and compost applied to the root zone during planting (G). The organic materials were spread in the form of mulch over the entire area during planting. After twenty years, it was found that the substrates used provided suitable growth conditions for mycobiome useful for pines. The addition of organic matter did not change the alpha biodiversity of the soil, but in the long term led to significant changes in the composition of mycobiota (beta biodiversity). The changes in the soil after the addition of organic material naturally accelerated the formation of the forest habitat. A number of fungi evolved that degraded added lignin and cellulose while being antagonists of H. annosum and other pine pathogens. In particular, the well-known hyperpathogens of the genus Trichoderma played an important role by promoting resistance of the soil environment to pathogens. Soil enrichment by bark compost and wood residues increased the relative abundance of Trichoderma more than fourfold.Mycorrhizal fungi became dominant in soil enriched with organic matter. After enriching the soil with bark compost, the relative abundance of Amphinema and Inocybe increased to 5%. The relative abundance of Russula in soil enriched with wood residues and sawdust increased to 9% and 5%, respectively. Mycorrhizal fungi, e.g., of the genus Ąmanita, Rusula, which formed root mycorrhizae, not only increased the root receiving area many times over, but also protected the roots (mechanically and chemically from pathogens). Altogether, the observed positive changes increase the chances that the first generation of pines will survive on the ground.
Fungal community diversity in soils under pedunculate oak Quercus robur L. and European beech Fagus sylvatica L. saplings produced with different technologies
Variability of Functional Groups of Rhizosphere Fungi of Norway Spruce (Picea abies (L.) H.Karst.) in the Boreal Range: The Wigry National Park, Poland
Rhizosphere microbial communities can influence plant growth and development. Natural regeneration processes take place in the tree stands of protected areas, which makes it possible to observe the natural changes taking place in the rhizosphere along with the development of the plants. This study aimed to determine the diversity (taxonomic and functional) of the rhizosphere fungal communities of Norway spruce growing in one of four developmental stages. Our research was based on the ITS region using Illumina system sequencing. Saprotrophs dominated in the studied rhizospheres, but their percentage share decreased with the age of the development group (for 51.91 from 43.13%). However, in the case of mycorrhizal fungi, an opposite trend was observed (16.96–26.75%). The most numerous genera were: saprotrophic Aspergillus (2.54–3.83%), Penicillium (6.47–12.86%), Pyrenochaeta (1.39–11.78%), pathogenic Curvularia (0.53–4.39%), and mycorrhizal Cortinarius (1.80–5.46%), Pseudotomentella (2.94–5.64%) and Tomentella (4.54–15.94%). The species composition of rhizosphere fungal communities was favorable for the regeneration of natural spruce and the development of multi-generational Norway spruce stands. The ratio of the abundance of saprotrophic and mycorrhizal fungi to the abundance of pathogens was high and promising for the durability of the large proportion of spruce in the Wigry National Park and for forest ecosystems in general.