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Quantitative and Qualitative Changes in the Genetic Diversity of Bacterial Communities in Anaerobic Bioreactors with the Diatomaceous Earth/Peat Cell Carrier
This paper analyses the impact of the diatomaceous earth/peat (DEP; 3:1) microbial carrier on changes in the bacterial microbiome and the development of biofilm in the anaerobic digestion (AD) of confectionery waste, combined with digested sewage sludge as inoculum. The physicochemical properties of the carrier material are presented, with particular focus on its morphological and dispersion characteristics, as well as adsorption and thermal properties. In this respect, the DEP system was found to be a suitable carrier for both mesophilic and thermophilic AD. The evaluation of quantitative and qualitative changes in the genetic diversity of bacterial communities, carried out using next-generation sequencing (NGS), showed that the material has a modifying effect on the bacterial microbiome. While Actinobacteria was the most abundant cluster in the WF-control sample (WF—waste wafers), Firmicutes was the dominant cluster in the digested samples without the carrier (WF-dig.; dig.—digested) and with the carrier (WF + DEP). The same was true for the count of Proteobacteria, which decreased twofold during biodegradation in favor of Synergistetes. The Syntrophomonas cluster was identified as the most abundant genus in the two samples, particularly in WF + DEP. This information was supplemented by observations of morphological features of microorganisms carried out using fluorescence microscopy. The biodegradation process itself had a significant impact on changes in the microbiome of samples taken from anaerobic bioreactors, reducing its biodiversity. As demonstrated by the results of this innovative method, namely the BioFlux microfluidic flow system, the decrease in the number of taxa in the digested samples and the addition of DEP contributed to the microbial adhesion in the microfluidic system and the formation of a stable biofilm.
Nitrogen Hotspots on the Farm—A Practice-Oriented Approach
The proactive management of nitrogen (N) on a farm is the best way to protect the environment against N pollution. The farm is the basic business unit, where simple and low-cost methods of identifying and ameliorating weaknesses (nitrogen hotspots) in the N-flow chain can be applied. The basis for the effective use of mineral N fertilizers (Nf) is the farmer’s knowledge of the farm’s own N resources, their quantity, and the potential availability for growing crops. These resources include both primary sources of N (N2 fixed by legumes) and those that are recyclable, which include crop byproducts and manure. On the other hand, crop requirements must be accurately quantified to exploit the yield potential of the crop varieties grown on the farm. The basic challenge for the farmer is to maximize the use efficiency of the N resources. In this regard, the farmer has two diagnostic tools available to recognize nitrogen hotspots and to quantify N resources. These are (1) the N balance method (difference between the N inputs and outputs), which allows for a surplus or deficiencies in the N-flow between farm units (fields, livestock housing) to be identified, and (2) the nitrogen gap, which is based on the amount of Nf applied and the yield of a given crop. It is possible to calculate the maximum attainable yield as well as identify the fields on the farm that require a correction of N management.
Additives Improving the Efficiency of Biogas Production as an Alternative Energy Source - A Review
Additives for anaerobic digestion (AD) can play a significant role in optimizing the process by increasing biogas production, stabilizing the system, and improving digestate quality. The role of additives largely boils down to, among others, enhancing direct interspecies electron transfer (DIET) between microbial communities, resulting in improved syntrophic interactions, adsorption of toxic substances that may inhibit microbial activity, improving microbial activity, and increasing process stability and accelerating the decomposition of complex organic materials, thereby increasing the rate of hydrolysis. Through the aforementioned action, additives can significantly affect AD performance. The function of these materials varies, from enhancing microbial activity to maintaining optimal conditions and protecting the system from inhibitors. The choice of additives should be carefully tailored to the specific needs and conditions of the digester to maximize benefits and ensure sustainability. In light of these considerations, this paper characterizes the most commonly used additives and their combinations based on a comprehensive review of recent scientific publications, including a report on the results of conducted studies. The publication features chapters that describe carbon-based conductive materials, metal oxide nanomaterials, trace metal, and biological additives, including enzymes and microorganisms. It concludes with the chapters summarising reports on various additives and discussing their functional properties, as well as advantages and disadvantages. The presented review is a substantive and concise analysis of the latest knowledge on additives for the AD process. The application of additives in AD is characterized by great potential; hence, the subject matter is very current and future-oriented.
Phosphorus HotSpots in Crop Plants Production on the Farm - Mitigating Critical Factors
Phosphorus resources, both in phosphate rocks and in the soil, are limited. However, effective food production is not possible without the use of P fertilizers. Recognizing and eliminating or at least ameliorating factors (hot spots) that interfere with the uptake and use of phosphorus (P) by crop plants is of key importance for effective use of both P and nitrogen (N) on the farm. Plants have developed many adaptation mechanisms to their environment, i.e., soil low in available phosphorus. The most important ones include the secretion of organic compounds into the rhizosphere and the association of plant roots with microorganisms. A classic example is mycorrhiza. These mechanisms can be used by the farmer to sequentially select plants in the crop rotation. The uptake of inorganic P (Pi) by plants from the soil is reduced by environmental (temperature and water) and soil factors (low content of available phosphorus, soil acidity, soil compaction). These factors are responsible for the growth and size of the root system. Mitigating these negative effects improves the efficiency of phosphorus uptake from the soil. The second group of critical factors, limiting both root growth and availability of phosphorus, can be effectively controlled using simple measures (for example, lime). Knowing this, the farmer must first control the level of soil fertility in the plant’s effective rooting zone and not only in the topsoil. Secondly, the farmer must multiply the productivity of applied mineral fertilizers used through targeted recycling: crop rotation, crop residues, and manure.
Enhancing Soil Microbial Activity and Spelt (Triticum spelta L.) Yield in Organic Farming Through Biofertilizer and Green Manure Applications
Effect of plant growth-promoting bacteria and undersown crops on the total protein content of spring barley grain grown in organic agriculture
The Response of the Mycobiome to the Biofumigation of Replanted Soil in a Fruit Tree Nursery
In a long-term monoculture with fruit trees and tree nurseries, it is necessary to regenerate the soil due to the risk of apple replant disease (ARD). The occurrence of ARD is manifested in the structure of the mycobiome. The assumption of our experiment was that the use of oil radish (Raphanus sativus var. oleifera), white mustard (Sinapis alba), and marigold (Tagetes patula L.) as phytosanitary plants for biofumigation would provide crops with nutrients, improve soil physicochemical properties, and influence the diversity of microbiota, including fungal networks, towards a beneficial mycobiome. Metagenomic analysis of fungal populations based on the hypervariable ITS1 region was used for assessing changes in the soil mycobiome. It showed that biofumigation, mainly with a forecrop of marigold (Tagetes patula L.) (R3), caused an improvement in soil physicochemical properties (bulk density and humus) and the highest increase in the abundance of operational taxonomic units (OTUs) of the Fungi kingdom, which was similar to that of agriculturally undegraded soils, and amounted to 54.37%. In this variant of the experiment, the most OTUs were identified at the phylum level, for Ascomycota (39.82%) and Mortierellomycota beneficial fungi (7.73%). There were no such dependencies in the soils replanted with forecrops of oilseed radish (Raphanus sativus var. oleifera) and white mustard (Sinapis alba). Biofumigation with marigold and oil radish contributed to a reduction in the genus Fusarium, which contains several significant plant-pathogenic species. The percentages of operational taxonomic units (OTUs) of Fusarium spp. decreased from 1.57% to 0.17% and 0.47%, respectively.
Zastosowanie substratów organicznych różnego pochodzenia jako nośników promujących wzrost roślin szczepów Trichoderma sp.
The Effect of Biofumigation on the Microbiome Composition in Replanted Soil in a Fruit Tree Nursery
The imbalance of the soil microbiome is a primary indicator of ARD (apple replant disease). Biofumigation is a treatment that enables the restoration of microbiome balance. This study involved an analysis of the taxonomic and functional diversity of bacterial communities in replanted soil (ARD), in replanted soils with forecrops of French marigold (Tagetes patula L.), white mustard (Sinapis alba), and oilseed radish (Raphanus sativus var. oleifera), and in agricultural soil. The biofumigation treatment with phytosanitary plants changed the structure and abundance of the replanted soil microbiome in a fruit tree nursery. The count of operational taxonomic units (OTU) of the Proteobacteria, Bacteroidota, Patescibacteria, Chloroflexi, and Verrucomicrobiota phyla increased, whereas the count of the Firmicutes, Acidobacteriota, and Actinobacteriota phyla decreased. Biofumigation caused an increase in the content of some dominant bacterial genera, such as Flavobacterium, Massila, Sphingomonas, Arenimonas, and Devosia, in the replanted soil. Their presence in the soil may improve the growth of plants, induce their systemic resistance, and thus improve the production properties of soil with ARD. The research results led to the conclusion that the use of phytosanitary plants in nursery production can be an effective alternative to the chemical fumigation of soil.
Effects of growing spring barley in organic agriculture as a result of constructed bacterial consortia and living mulch
The Use of Fungi of the Trichoderma Genus in Anaerobic Digestion: A Review
Plant waste biomass is the most abundant renewable energy resource on Earth. The main problem with utilising this biomass in anaerobic digestion is the long and costly stage of degrading its complex structure into simple compounds. One of the promising solutions to this problem is the application of fungi of the Trichoderma genus, which show a high capacity to produce hydrolytic enzymes capable of degrading lignocellulosic biomass before anaerobic digestion. This article discusses the structure of plant waste biomass and the problems resulting from its structure in the digestion process. It presents the methods of pre-treatment of lignocellulose with a particular focus on biological solutions. Based on the latest research findings, key parameters related to the application of Trichoderma sp. as a pre-treatment method are discussed. In addition, the possibility of using the digestate from agricultural biogas plants as a carrier for the multiplication of the Trichoderma sp. fungi, which are widely used in many industries, is discussed.
Consortia of Plant Growth-Promoting Rhizobacteria and Selected Catch Crops for Increasing Microbial Activity in Soil under Spring Barley Grown as an Organic Farming System
In order to protect and remediate soils, organic farming methods have grown in popularity. The aim of the study was to evaluate the effect of rhizobacteria (Bacillus subtilis, Bacillus amyloliquefaciens, Pseudomonas fluorescens) and catch crops (undersown red clover alone, undersown Italian ryegrass alone and a mixture of clover and ryegrass) on the microbiological activity of the soil under organic spring barley. In 2019–2021, a field experiment was carried out on an organic farm, randomly in eight variants, each in three repetitions. The following parameters were analyzed: enzymatic activity of dehydrogenases (DHA), acid phosphatase (PAC) and catalase (CAT), soil fertility index (BIF), and a number of selected physiological groups of microorganisms (molds, bacteria, and actinomycetes). Compared to the control variant (without catch crops and bacteria), the values of DHA, CAT, and BIF increased significantly in the variant in which rhizobacteria and catch crops were used simultaneously. The highest BIF, of 32, was obtained in 2019, after the application of red clover catch crop + Italian ryegrass + rhizobacteria. PAC activity dropped significantly after the application of the bacterial consortium alone and was lower than the control by an average of 30%.
Wpływ nośników w postaci krzemionki i ligniny na różnorodność mikrobiomu bakteryjnego oraz wydajność fermentacji metanowej
Spatial-Temporal Differentiation of Soil Biochemical Parameters and Their Relationship with Nitrogen Resources during the Vegetation Period of Selected Crops
Understanding the spatial–temporal variability of soil enzymatic activity and its relationship with nitrogen (N) resources in the soil and crop yield is crucial in rational management practices of mineral fertilization. The scarcity of comprehensive studies on geostatic analyses of agricultural soils and plant yields, which would take into account both temporal and spatial variability, was the reason for undertaking this research. The aim of this study was to determine the spatial and temporal variability of the activity of soil enzymes, such as acid (PAC) and alkaline (PAL) phosphatases, urease (URE) and protease (PROT), the content of N-NH4 (ammonium ions), N-NO3 (nitrate ions), phosphorus (P), pH, moisture, as well as crop yield on a conventionally managed farmland of 40 ha. During the two-year experiment, soil samples were collected from 37 measurement points. Wheat was the first tested crop, followed by oilseed rape. It was shown that all the tested soil parameters showed temporal and spatial variability, and a significant number of them were significantly higher in July. The creation of raster maps showing the distribution of the tested parameters allowed for the observation of the considerable activity of PAC, PAL, URE, and PROT, as well as a high application of N-NO3 in the southern part of the field during the growth of the plants. The statistical analysis revealed a negative interaction between the N-NH4 and N-NO3 and the urease in the soil under the cultivation of plants. The pH and the percentage of moisture in the soil also had higher values in the south of the field. This pointed to the existence of separate production zones in the south-central part of the field, characterized by a higher yield of wheat and rape. On the basis of the conducted research, it was unequivocally stated that the values of enzymatic and chemical parameters of the soil were reflected in the size of the yield obtained, which allows conclusions to be drawn with respect to the rational management of N in the production process, laying the foundations for precision agriculture.
A combination of bacterial products and cover crops as an innovative method of weed control in organic spring barley
Anaerobic Digestion of Food Waste—A Short Review
In recent years, growing environmental awareness, the need to reduce greenhouse gas emissions, and the energy crisis have led many countries to seek alternative energy sources. One of the most promising solutions is biogas production via anaerobic digestion (AD), whose substrate can be organic-rich and easily biodegradable food waste (FW). This waste is a significant part of the global waste problem, and its use for energy production is beneficial to both the environment and the economy. This paper presents important issues concerning the monitoring of the AD process, as well as standard and innovative, for the implementation of this process, technological solutions. The aim of the measures taken to optimise the process is to increase AD efficiency and obtain the highest possible methane content in biogas. Two approaches—pretreatment and anaerobic co-digestion (AcoD)—have been integral to the implementation of AD of food waste for years. They are presented in this paper based on a review of recent research developments. Pretreatment methods are discussed with particular emphasis on mechanical, chemical and biological methods. The AcoD of FW with different organic substrates has been extensively reviewed, as confirmed by numerous studies, where higher buffer capacity and optimum nutrient balance enhance the biogas/methane yields. Attention was also paid to the parameters, operating mode and configurations of anaerobic digesters, with a thorough analysis of the advantages and disadvantages of each solution. The article concludes with a brief presentation of the development perspectives for the discussed FW management method and recommendations.
