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Fingerprinting, structure, and genetic relationships among selected accessions of blue honeysuckle (Lonicera caerulea L.) from European collections

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cris.virtualsource.author-orcid51a5a68b-106b-4e9d-bd9b-79d15d3ec0c1
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dc.abstract.enDue to its value and economic importance, the genome of Lonicera caerulea L. has been widely studied in various fields of science. In this study the genetic structure and relationships between 24 accessions of L. caerulea of different origins were assessed. A total of 692, 814, and 258 loci were amplified using 43 RAPD (random amplified polymorphic DNA), 40 ISSR (intersimple sequence repeat), and 20 R-ISSR (RAPD+ISSR) primers, respectively. Among the amplified loci, 66–78% were polymorphic and 12–20% were private. Selected R-ISSR sequences were detected in Lonicera japonica transcripts. Cluster and STRUCTURE analyses performed for each of the techniques revealed the existing differences and unknown similarities between the genotypes. The r-factor values calculated in the Mantel test indicated highly significant positive correlations between the Nei distance matrices, similar to the FST values (FST_RAPD = 0.223, FST_ISSR = 0.279, FST_R-ISSR = 0.363) determined in the analysis of molecular variance. It was found that 78%, 72%, and 64% of the genetic variations were related to the differences observed within the populations, which suggest that the variations are mainly reflected in the differences among the genotypes. The principal coordinate analysis showed greater differences between the mean distances of the Lonicera genotype pair and the actual distances of the same pairs on the Nei matrix compared to multidimensional scaling. These differences were 45%, 56%, and 42% higher for RAPD, ISSR and R-ISSR, respectively.
dc.affiliationWydział Rolnictwa, Ogrodnictwa i Bioinżynierii
dc.affiliation.instituteKatedra Metod Matematycznych i Statystycznych
dc.contributor.authorSmolik, Miłosz
dc.contributor.authorOchmian, Ireneusz
dc.contributor.authorBobrowska-Chwat, Aleksandra
dc.contributor.authorChwat, Gerard
dc.contributor.authorArus, Liina
dc.contributor.authorBanaszczak, Piotr
dc.contributor.authorBocianowski, Jan
dc.contributor.authorMilczarski, Paweł
dc.contributor.authorOstrowska, Krystyna
dc.date.access2025-11-04
dc.date.accessioned2025-11-05T09:07:08Z
dc.date.available2025-11-05T09:07:08Z
dc.date.copyright2022-03-23
dc.date.issued2022
dc.description.accesstimeat_publication
dc.description.bibliographyil., bibliogr.
dc.description.financepublication_nocost
dc.description.financecost0,00
dc.description.numberJune 2022
dc.description.points100
dc.description.versionfinal_published
dc.description.volume34
dc.identifier.doi10.1016/j.btre.2022.e00721
dc.identifier.issn2215-017X
dc.identifier.urihttps://sciencerep.up.poznan.pl/handle/item/5738
dc.identifier.weblinkhttps://www.sciencedirect.com/science/article/pii/S2215017X22000212
dc.languageen
dc.pbn.affiliationagriculture and horticulture
dc.relation.ispartofBiotechnology Reports
dc.relation.pagese00721
dc.rightsCC-BY
dc.sciencecloudnosend
dc.share.typeOPEN_JOURNAL
dc.subject.enLonicera
dc.subject.enR-ISSR
dc.subject.enNew molecular markers
dc.subject.enSTRUCTURE
dc.subject.enMDS
dc.subject.enPCoA
dc.titleFingerprinting, structure, and genetic relationships among selected accessions of blue honeysuckle (Lonicera caerulea L.) from European collections
dc.typeJournalArticle
dspace.entity.typePublication
oaire.citation.volume34