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A pan-genome of commercial pig breeds

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cris.virtual.author-orcid0000-0002-7642-0787
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dc.abstract.enGenomics related research in animal breeding is usually performed by comparing genomic information to an existing reference genome. However, even if the reference genome is of high quality, the use of a single reference genome has clear drawbacks. Therefore, the breeding community is shifting towards the construction of a pan-genome for important agricultural species. In this study we produced a pig pangenome based on four different breeds (Landrace, Large White, Synthetic, Duroc) using the nanopore long read sequencing technology. We produced chromosome arm level assemblies comparable to the current Sus scrofa 11.1 reference genome. We identified between breed structural variation, which gives a unique insight in the genomic structural variation that define and differentiates breeds. The pig pan-genome will facilitate the discovery of novel variation providing a unique fundamental insight into breed genomic characteristics, which can subsequently be utilized for breeding.
dc.affiliationWydział Medycyny Weterynaryjnej i Nauk o Zwierzętach
dc.affiliation.instituteKatedra Genetyki i Podstaw Hodowli Zwierząt​​
dc.contributor.authorDerks, M.F.L.
dc.contributor.authorBoshove, A.
dc.contributor.authorHarlizius, B.
dc.contributor.authorSell-Kubiak, Ewa
dc.contributor.authorLopes, M.S.
dc.contributor.authorGrindflek, E.
dc.contributor.authorKnol, E.
dc.contributor.authorGroenen, M.A.M
dc.contributor.authorGjuvsland, A.B.
dc.contributor.editorVeerkamp, F.R.
dc.contributor.editorde Haas, Y.
dc.date.access2026-01-14
dc.date.accessioned2026-01-16T08:50:34Z
dc.date.available2026-01-16T08:50:34Z
dc.date.copyright2022
dc.date.issued2022
dc.description.accesstimeat_publication
dc.description.additional10.3920/978-90-8686-940-4 DOI do całości publikacji
dc.description.bibliographyil., bibliogr.
dc.description.financepublication_nocost
dc.description.financecost0,00
dc.description.versionfinal_published
dc.identifier.doi10.3920/978-90-8686-940-4_564
dc.identifier.isbn978-90-8686-940-4
dc.identifier.urihttps://sciencerep.up.poznan.pl/handle/item/6932
dc.identifier.weblinkhttps://brill.com/edcollbook-oa/title/68845
dc.languageen
dc.pubinfoThe Netherlands
dc.publisher.ministerialWageningen Academic Publishers
dc.relation.bookProceedings of the 12th World Congress on Genetics Applied to Livestock Production (WCGALP). Technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges
dc.relation.pages2337-2341
dc.rightsCC-BY
dc.sciencecloudnosend
dc.share.typePUBLISHER_WEBSITE
dc.titleA pan-genome of commercial pig breeds
dc.typeMonographChapterConference
dspace.entity.typePublication