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A dataset for revealing the potential of inter-primer binding site (iPBS), Start codon-targeted (SCoT), and CAAT box-derived polymorphism (CBDP) in exploring genetic diversity and grouping the plant genetic materials: A case study in Aegilops tauschii populations

cris.virtual.author-orcid0000-0002-0102-0084
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cris.virtual.author-orcid0000-0002-8011-9487
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cris.virtualsource.author-orcid51a5a68b-106b-4e9d-bd9b-79d15d3ec0c1
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cris.virtualsource.author-orcid20597688-8be2-4b58-9e15-29f5ff8c53aa
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dc.abstract.enExploring genetic diversity and grouping genetic materials into distinguished clusters are basic steps in developing sustainable crop varieties within any breeding program. In this line, the molecular marker systems serve as one of the most important biological tools that provide valuable information at the molecular level. In this dataset, three molecular marker techniques, including inter-primer binding site (iPBS), Start codon-targeted (SCoT), and CAAT box–derived polymorphism (CBDP) in terms of their potential to explore genetic diversity and group the 111 Aegilops tauschii accessions. Based on the results, iPBS primers showed higher values for total amplified fragments (TAF = 14.70), polymorphic amplified fragments (PAF = 14.70), polymorphism information content (PIC = 0.41), marker index (MI = 16.31), and resolving power (Rp = 6.13) compare to SCoT (TAF = 10.80; PAF = 10.80; PIC = 0.38; MI = 12.90; Rp = 4.12) and CBDP (TAF = 9.93; PAF = 9.33; PIC = 0.37; MI = 4.12; Rp = 3.44) markers. In all analysis of molecular variance (AMOVA) based each marker technique, the genetic variation within populations was exceeded the variation among them (SCoT = 57 % vs 42 %; CBDP = 58 % vs 42 %; iPBS = 68 % vs 32 %). However, gene-targeted markers (SCoT and CBDP) showed more efficiency in grouping the accessions compared to iPBS technique. In more detail, CBDP markers revealed a clearer and more stable grouping of Ae. tauschii accessions, so grouping patterns were consistent with the geographical distributions of the studied accessions. Overall, this report suggests that the CBDP marker technique can serve as a powerful genotyping tool with substantial potential for assessing genetic diver- sity and further phylogenetic studies.
dc.affiliationWydział Rolnictwa, Ogrodnictwa i Biotechnologii
dc.affiliation.instituteKatedra Metod Matematycznych i Statystycznych
dc.affiliation.instituteKatedra Genetyki i Hodowli Roślin
dc.contributor.authorMoradkhani, Hoda
dc.contributor.authorJadidi, Omid
dc.contributor.authorJamshidi, Bita
dc.contributor.authorTurkoglu, Aras
dc.contributor.authorBocianowski, Jan
dc.contributor.authorNiemann, Janetta
dc.contributor.authorPour-Aboughadareh, Alireza
dc.date.access2026-03-18
dc.date.accessioned2026-03-18T11:22:44Z
dc.date.available2026-03-18T11:22:44Z
dc.date.copyright2026-02-09
dc.date.issued2026
dc.description.accesstimeat_publication
dc.description.bibliographyil., bibliogr.
dc.description.financeother
dc.description.financecost6000,00
dc.description.if1,4
dc.description.numberApril 2026
dc.description.points40
dc.description.versionfinal_published
dc.description.volume65
dc.identifier.doi10.1016/j.dib.2026.112548
dc.identifier.issn2352-3409
dc.identifier.urihttps://sciencerep.up.poznan.pl/handle/item/7806
dc.identifier.weblinkhttps://www.sciencedirect.com/science/article/pii/S2352340926001010
dc.languageen
dc.pbn.affiliationagriculture and horticulture
dc.relation.ispartofData in Brief
dc.relation.pagesart. 112548
dc.rightsCC-BY-NC
dc.sciencecloudnosend
dc.share.typeOPEN_JOURNAL
dc.subject.enmolecular markers
dc.subject.engenetic diversity
dc.subject.enwheat germplasm
dc.subject.encluster analysis
dc.subject.enAMOVA
dc.titleA dataset for revealing the potential of inter-primer binding site (iPBS), Start codon-targeted (SCoT), and CAAT box-derived polymorphism (CBDP) in exploring genetic diversity and grouping the plant genetic materials: A case study in Aegilops tauschii populations
dc.typeJournalArticle
dspace.entity.typePublication
oaire.citation.volume65