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The Effect of Biofumigation on the Microbiome Composition in Replanted Soil in a Fruit Tree Nursery

cris.virtual.author-orcid0000-0002-1147-2973
cris.virtual.author-orcid0000-0003-0421-6071
cris.virtual.author-orcid0000-0002-4237-6407
cris.virtual.author-orcid0000-0002-5811-8437
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cris.virtualsource.author-orcidc08fd574-d16e-4443-9d2d-56dc7f1f7615
cris.virtualsource.author-orcid9462fa94-74eb-4b70-864b-63d84802f9f0
cris.virtualsource.author-orcidbed1e4f8-04b9-4a1e-939f-aa94095604ec
cris.virtualsource.author-orcid4001d30a-042b-42e3-95bc-a1e53e717712
cris.virtualsource.author-orcid#PLACEHOLDER_PARENT_METADATA_VALUE#
dc.abstract.enThe imbalance of the soil microbiome is a primary indicator of ARD (apple replant disease). Biofumigation is a treatment that enables the restoration of microbiome balance. This study involved an analysis of the taxonomic and functional diversity of bacterial communities in replanted soil (ARD), in replanted soils with forecrops of French marigold (Tagetes patula L.), white mustard (Sinapis alba), and oilseed radish (Raphanus sativus var. oleifera), and in agricultural soil. The biofumigation treatment with phytosanitary plants changed the structure and abundance of the replanted soil microbiome in a fruit tree nursery. The count of operational taxonomic units (OTU) of the Proteobacteria, Bacteroidota, Patescibacteria, Chloroflexi, and Verrucomicrobiota phyla increased, whereas the count of the Firmicutes, Acidobacteriota, and Actinobacteriota phyla decreased. Biofumigation caused an increase in the content of some dominant bacterial genera, such as Flavobacterium, Massila, Sphingomonas, Arenimonas, and Devosia, in the replanted soil. Their presence in the soil may improve the growth of plants, induce their systemic resistance, and thus improve the production properties of soil with ARD. The research results led to the conclusion that the use of phytosanitary plants in nursery production can be an effective alternative to the chemical fumigation of soil.
dc.affiliationWydział Rolnictwa, Ogrodnictwa i Biotechnologii
dc.affiliation.instituteKatedra Roślin Ozdobnych, Dendrologii i Sadownictwa
dc.affiliation.instituteKatedra Gleboznawstwa i Mikrobiologii
dc.affiliation.instituteKatedra Metod Matematycznych i Statystycznych
dc.contributor.authorWieczorek, Robert
dc.contributor.authorZydlik, Zofia
dc.contributor.authorWolna-Maruwka, Agnieszka
dc.contributor.authorNiewiadomska, Alicja
dc.contributor.authorKayzer, Dariusz
dc.date.access2025-05-29
dc.date.accessioned2025-09-01T06:37:39Z
dc.date.available2025-09-01T06:37:39Z
dc.date.copyright2023-09-28
dc.date.issued2023
dc.description.abstract<jats:p>The imbalance of the soil microbiome is a primary indicator of ARD (apple replant disease). Biofumigation is a treatment that enables the restoration of microbiome balance. This study involved an analysis of the taxonomic and functional diversity of bacterial communities in replanted soil (ARD), in replanted soils with forecrops of French marigold (Tagetes patula L.), white mustard (Sinapis alba), and oilseed radish (Raphanus sativus var. oleifera), and in agricultural soil. The biofumigation treatment with phytosanitary plants changed the structure and abundance of the replanted soil microbiome in a fruit tree nursery. The count of operational taxonomic units (OTU) of the Proteobacteria, Bacteroidota, Patescibacteria, Chloroflexi, and Verrucomicrobiota phyla increased, whereas the count of the Firmicutes, Acidobacteriota, and Actinobacteriota phyla decreased. Biofumigation caused an increase in the content of some dominant bacterial genera, such as Flavobacterium, Massila, Sphingomonas, Arenimonas, and Devosia, in the replanted soil. Their presence in the soil may improve the growth of plants, induce their systemic resistance, and thus improve the production properties of soil with ARD. The research results led to the conclusion that the use of phytosanitary plants in nursery production can be an effective alternative to the chemical fumigation of soil.</jats:p>
dc.description.accesstimeat_publication
dc.description.bibliographyil., bibliogr.
dc.description.financepublication_nocost
dc.description.financecost0,00
dc.description.if3,3
dc.description.number10
dc.description.points100
dc.description.versionfinal_published
dc.description.volume13
dc.identifier.doi10.3390/agronomy13102507
dc.identifier.issn2073-4395
dc.identifier.urihttps://sciencerep.up.poznan.pl/handle/item/4539
dc.identifier.weblinkhttps://www.mdpi.com/2073-4395/13/10/2507
dc.languageen
dc.relation.ispartofAgronomy
dc.relation.pagesart. 2507
dc.rightsCC-BY
dc.sciencecloudnosend
dc.share.typeOPEN_JOURNAL
dc.subject.enphytosanitary plants
dc.subject.enARD
dc.subject.enbacterial genera
dc.titleThe Effect of Biofumigation on the Microbiome Composition in Replanted Soil in a Fruit Tree Nursery
dc.title.volumeSpecial Issue Plant Production and Microorganism Potential in Modern Agro-Ecosystems—2nd Edition
dc.typeJournalArticle
dspace.entity.typePublication
oaire.citation.issue10
oaire.citation.volume13