Review of Methods and Models for Potato Yield Prediction
2025, Piekutowska Magdalena, Niedbała, Gniewko
Can mineral resources be a blessing in disguise for green finance in G7 countries? Mineral resources for COP28 green financing goal
2025, Do Phuong, Huyen, Guerrero, John William Grimaldo, Aldawsari, Salem Hamad, Alhebr, Adeeb, Muda, Iskandar, Niedbała, Gniewko
Uncovering rain-fed resilience power of grass pea in Iran using AMMI, BLUP, and multi-trait stability parameters
2025, Maleki, Hamid Hatami, Vaezi, Behrouz, Pirooz, Reza, Darvishzadeh, Reza, Modareskia, Mohsen, Dadashi, Somayyeh, Niedbała, Gniewko
Optimization of seeding rate and foliar application management to improve rainfed wheat physiological characteristics, grain yield and quality
2025, Moradi, Layegh, Siosemardeh, Adel, Niedbała, Gniewko
Predicting Starch Content in Early Potato Varieties Using Neural Networks and Regression Models: A Comparative Study
2024, Piekutowska, Magdalena, Hara, Patryk, Pentoś, Katarzyna, Lenartowicz, Tomasz, Wojciechowski, Tomasz, Kujawa, Sebastian, Niedbała, Gniewko
Starch content serves as a crucial indicator of the quality and palatability of potato tubers. It has become a common practice to evaluate the polysaccharide content directly in tubers freshly harvested from the field. This study aims to develop models that can predict starch content prior to the harvesting of potato tubers. Very early potato varieties were cultivated in the northern and northwestern regions of Poland. The research involved constructing multiple linear regression (MLR) and artificial neural network (ANN-MLP) models, drawing on data from eight years of field trials. The independent variables included factors such as sunshine duration, average daily air temperatures, precipitation, soil nutrient levels, and phytophenological data. The NSM demonstrated a higher accuracy in predicting the dependent variable compared to the RSM, with MAPE errors of 7.258% and 9.825%, respectively. This study confirms that artificial neural networks are an effective tool for predicting starch content in very early potato varieties, making them valuable for monitoring potato quality.
Identification of Novel QTLs Associated with Frost Tolerance in Winter Wheat (Triticum aestivum L.)
2023, Bolouri, Parisa, Haliloğlu, Kamil, Mohammadi, Seyyed Abolghasem, Türkoğlu, Aras, İlhan, Emre, Niedbała, Gniewko, Szulc, Piotr, Niazian, Mohsen
Low temperature (cold) and freezing stress is a major problem during winter wheat growth. Low temperature tolerance (LT) is an important agronomic trait in winter wheat and determines the plants’ ability to cope with below-freezing temperatures; thus, the development of cold-tolerant cultivars has become a major goal of breeding in various regions of the world. In this study, we sought to identify quantitative trait loci (QTL) using molecular markers related to freezing tolerance in winter. Thirty-four polymorphic markers among 425 SSR markers were obtained for the population, including 180 inbred lines of F12 generation wheat, derived from crosses (Norstar × Zagros) after testing with parents. LT50 is used as an effective selection criterion for identifying frost-tolerance genotypes. The progeny of individual F12 plants were used to evaluate LT50. Several QTLs related to wheat yield, including heading time period, 1000-seed weight, and number of surviving plants after overwintering, were identified. Single-marker analysis illustrated that four SSR markers with a total of 25% phenotypic variance determination were linked to LT50. Related QTLs were located on chromosomes 4A, 2B, and 3B. Common QTLs identified in two cropping seasons based on agronomical traits were two QTLs for heading time period, one QTL for 1000-seed weight, and six QTLs for number of surviving plants after overwintering. The four markers identified linked to LT50 significantly affected both LT50 and yield-related traits simultaneously. This is the first report to identify a major-effect QTL related to frost tolerance on chromosome 4A by the marker XGWM160. It is possible that some QTLs are closely related to pleiotropic effects that control two or more traits simultaneously, and this feature can be used as a factor to select frost-resistant lines in plant breeding programs.
Response of Maize Varieties (Zea mays L.) to the Application of Classic and Stabilized Nitrogen Fertilizers—Nitrogen as a Predictor of Generative Yield
2023, Szulc, Piotr, Krauklis, Daniel, Ambroży-Deręgowska, Katarzyna, Wróbel, Barbara, Niedbała, Gniewko, Niazian, Mohsen, Selwet, Marek
The study presents the results of a 3-year field trial aimed at assessing the yield and efficiency indicators of nitrogen application in the cultivation of three maize cultivars differing in agronomic and genetic profile. The advantages of the UltraGrain stabilo formulation (NBPT and NPPT) over ammonium nitrate and urea are apparent if a maize cultivar capable of efficient nutrient uptake in the pre-flowering period and effective utilization during the grain filling stage is selected. Therefore, the rational fertilization of maize with urea-based nitrogen fertilizer with a urease inhibitor requires the simultaneous selection of cultivars that are physiologically profiled for efficient nitrogen utilization from this form of fertilizer (“stay-green” cultivar). The interaction of a selective cultivar with a high genetically targeted potential for nitrogen uptake from soil, combined with a targeted selection of nitrogen fertilizer, is important not only in terms of production, but also environmental and economic purposes.
Neural Modelling from the Perspective of Selected Statistical Methods on Examples of Agricultural Applications
2023, Boniecki, Piotr, Sujak, Agnieszka, Niedbała, Gniewko, Piekarska-Boniecka, Hanna, Wawrzyniak, Agnieszka, Przybylak, Andrzej Mieczysław
Modelling plays an important role in identifying and solving problems that arise in a number of scientific issues including agriculture. Research in the natural environment is often costly, labour demanding, and, in some cases, impossible to carry out. Hence, there is a need to create and use specific “substitutes” for originals, known in a broad sense as models. Owing to the dynamic development of computer techniques, simulation models, in the form of information technology (IT) systems that support cognitive processes (of various types), are acquiring significant importance. Models primarily serve to provide a better understanding of studied empirical systems, and for efficient design of new systems as well as their rapid (and also inexpensive) improvement. Empirical mathematical models that are based on artificial neural networks and mathematical statistical methods have many similarities. In practice, scientific methodologies all use different terminology, which is mainly due to historical factors. Unfortunately, this distorts an overview of their mutual correlations, and therefore, fundamentally hinders an adequate comparative analysis of the methods. Using neural modelling terminology, statisticians are primarily concerned with the process of generalisation that involves analysing previously acquired noisy empirical data. Indeed, the objects of analyses, whether statistical or neural, are generally the results of experiments that, by their nature, are subject to various types of errors, including measurement errors. In this overview, we identify and highlight areas of correlation and interfacing between several selected neural network models and relevant, commonly used statistical methods that are frequently applied in agriculture. Examples are provided on the assessment of the quality of plant and animal production, pest risks, and the quality of agricultural environments.
Physiological and Antioxidative Effects of Strontium Oxide Nanoparticles on Wheat
2024, Kaysım, Mustafa Güven, Kumlay, Ahmet Metin, Haliloglu, Kamil, Türkoğlu, Aras, Piekutowska, Magdalena, Nadaroğlu, Hayrunnisa, Alayli, Azize, Niedbała, Gniewko
We explored the impact of strontium oxide nanoparticles (SrO-NPs), synthesized through a green method, on seedling growth of bread wheat in hydroponic systems. The wheat plants were exposed to SrO-NPs concentrations ranging from 0.5 mM to 8.0 mM. Various parameters, including shoot length (cm), shoot fresh weight (g), root number, root length (cm), root fresh weight (g), chlorophyll value (SPAD), cell membrane damage (%), hydrogen peroxide (H2O2) value (µmol/g), malondialdehyde (MDA) value (ng/µL), and enzymatic activities like ascorbate peroxidase (APX) activity (EU/g FW), peroxidase (POD) activity (EU/g FW), and superoxide dismutase (SOD) activity (U/g FW), were measured to assess the effects of SrO-NPs on the wheat plants in hydroponic conditions. The results showed that the SrO-NPs in different concentrations were significantly affected considering all traits. The highest values were obtained from the shoot length (20.77 cm; 0.5 mM), shoot fresh weight (0.184 g; 1 mM), root number (5.39; 8 mM), root length (19.69 cm; 0 mM), root fresh weight (0.142 g; 1 mM), SPAD (33.20; 4 mM), cell membrane damage (58.86%; 4 mM), H2O2 (829.95 µmol/g; 6 mM), MDA (0.66 ng/µl; 8 mM), APX (3.83 U/g FW; 6 mM), POD (70.27 U/g FW; 1.50 mM), and SOD (60.77 U/g FW; 8 mM). The data unequivocally supports the effectiveness of SrO-NPs application in promoting shoot and root development, chlorophyll levels, cellular tolerance, and the activation of enzymes in wheat plants.
Energy deprivation to financial prosperity: Unveiling multidimensional energy Poverty's influence
2024, Shabbir, Malik Shahzad, Cheong, Calvin W.H., Jaradat, Mohammad, Lile, Ramona, Niedbała, Gniewko, Gadoiu, Mihaela
Combining Machine Learning Algorithms with Earth Observations for Crop Monitoring and Management
2025, Piekutowska, Magdalena, Niedbała, Gniewko, Kujawa, Sebastian, Wojciechowski, Tomasz
Combining machine learning algorithms with Earth observations has great potential in the context of crop monitoring and management, which is essential in the face of global challenges related to food security and climate change [...]
Comparative Evaluation of CNN and Transformer Architectures for Flowering Phase Classification of Tilia cordata Mill. with Automated Image Quality Filtering
2025, Arct, Bogdan, Świderski, Bartosz, Różańska , Monika A., Chojnicki, Bogdan, Wojciechowski, Tomasz, Niedbała, Gniewko, Kruk, Michał, Bobran, Krzysztof, Kurek, Jarosław
Understanding and monitoring the phenological phases of trees is essential for ecological research and climate change studies. In this work, we present a comprehensive evaluation of state-of-the-art convolutional neural networks (CNNs) and transformer architectures for the automated classification of the flowering phase of Tilia cordata Mill. (small-leaved lime) based on a large set of real-world images acquired under natural field conditions. The study introduces a novel, automated image quality filtering approach using an XGBoost classifier trained on diverse exposure and sharpness features to ensure robust input data for subsequent deep learning models. Seven modern neural network architectures, including VGG16, ResNet50, EfficientNetB3, MobileNetV3 Large, ConvNeXt Tiny, Vision Transformer (ViT-B/16), and Swin Transformer Tiny, were fine-tuned and evaluated under a rigorous cross-validation protocol. All models achieved excellent performance, with cross-validated F1-scores exceeding 0.97 and balanced accuracy up to 0.993. The best results were obtained for ResNet50 and ConvNeXt Tiny (F1-score: 0.9879 ± 0.0077 and 0.9860 ± 0.0073, balanced accuracy: 0.9922 ± 0.0054 and 0.9927 ± 0.0042, respectively), indicating outstanding sensitivity and specificity for both flowering and non-flowering classes. Classical CNNs (VGG16, ResNet50, and ConvNeXt Tiny) demonstrated slightly superior robustness compared to transformer-based models, though all architectures maintained high generalization and minimal variance across folds. The integrated quality assessment and classification pipeline enables scalable, high-throughput monitoring of flowering phases in natural environments. The proposed methodology is adaptable to other plant species and locations, supporting future ecological monitoring and climate studies. Our key contributions are as follows: (i) introducing an automated exposure-quality filtering stage for field imagery; (ii) publishing a curated, season-long dataset of Tilia cordata images; and (iii) providing the first systematic cross-validated benchmark that contrasts classical CNNs with transformer architectures for phenological phase recognition.
Zinc Oxide Nanoparticles: An Influential Element in Alleviating Salt Stress in Quinoa (Chenopodium quinoa L. Cv Atlas)
2024, Türkoğlu, Aras, Haliloğlu, Kamil, Ekinci, Melek, Turan, Metin, Yildirim, Ertan, Öztürk, Halil İbrahim, Stansluos, Atom Atanasio Ladu, Nadaroğlu, Hayrunnisa, Piekutowska, Magdalena, Niedbała, Gniewko
Climate change has intensified abiotic stresses, notably salinity, detrimentally affecting crop yield. To counter these effects, nanomaterials have emerged as a promising tool to mitigate the adverse impacts on plant growth and development. Specifically, zinc oxide nanoparticles (ZnO-NPs) have demonstrated efficacy in facilitating a gradual release of zinc, thus enhancing its bioavailability to plants. With the goal of ensuring sustainable plant production, our aim was to examine how green-synthesized ZnO-NPs influence the seedling growth of quinoa (Chenopodium quinoa L. Cv Atlas) under conditions of salinity stress. To induce salt stress, solutions with three different NaCl concentrations (0, 100, and 200 mM) were prepared. Additionally, Zn and ZnO-NPs were administered at four different concentrations (0, 50, 100, and 200 ppm). In this study, plant height (cm), plant weight (g), plant diameter (mm), chlorophyll content (SPAD), K/Na value, Ca/Na value, antioxidant enzyme activities (SOD: EU g−1 leaf; CAT: EU g−1 leaf; POD: EU g−1 leaf), H2O2 (mmol kg−1), MDA (nmol g−1 DW), proline (µg g−1 FW), and sucrose (g L−1), content parameters were measured. XRD analysis confirmed the crystalline structure of ZnO nanoparticles with identified planes. Salinity stress significantly reduced plant metrics and altered ion ratios, while increasing oxidative stress indicators and osmolytes. Conversely, Zn and ZnO-NPs mitigated these effects, reducing oxidative damage and enhancing enzyme activities. This supports Zn’s role in limiting salinity uptake and improving physiological responses in quinoa seedlings, suggesting a promising strategy for enhancing crop resilience. Overall, this study underscores nanomaterials’ potential in sustainable agriculture and stress management.
Digital Innovations in Agriculture
2023, Niedbała, Gniewko, Kujawa, Sebastian
Digital agriculture, defined as the analysis and collection of various farm data, is constantly evolving [...]
Investigation of the Influence of Polyamines on Mature Embryo Culture and DNA Methylation of Wheat (Triticum aestivum L.) Using the Machine Learning Algorithm Method
2023, Eren, Barış, Türkoğlu, Aras, Haliloğlu, Kamil, Demirel, Fatih, Nowosad, Kamila, Özkan, Güller, Niedbała, Gniewko, Pour-Aboughadareh, Alireza, Bujak, Henryk, Bocianowski, Jan
Numerous factors can impact the efficiency of callus formation and in vitro regeneration in wheat cultures through the introduction of exogenous polyamines (PAs). The present study aimed to investigate in vitro plant regeneration and DNA methylation patterns utilizing the inter-primer binding site (iPBS) retrotransposon and coupled restriction enzyme digestion–iPBS (CRED–iPBS) methods in wheat. This investigation involved the application of distinct types of PAs (Put: putrescine, Spd: spermidine, and Spm: spermine) at varying concentrations (0, 0.5, 1, and 1.5 mM). The subsequent outcomes were subjected to predictive modeling using diverse machine learning (ML) algorithms. Based on the specific polyamine type and concentration utilized, the results indicated that 1 mM Put and Spd were the most favorable PAs for supporting endosperm-associated mature embryos. Employing an epigenetic approach, Put at concentrations of 0.5 and 1.5 mM exhibited the highest levels of genomic template stability (GTS) (73.9%). Elevated Spd levels correlated with DNA hypermethylation while reduced Spm levels were linked to DNA hypomethylation. The in vitro and epigenetic characteristics were predicted using ML techniques such as the support vector machine (SVM), extreme gradient boosting (XGBoost), and random forest (RF) models. These models were employed to establish relationships between input variables (PAs, concentration, GTS rates, Msp I polymorphism, and Hpa II polymorphism) and output parameters (in vitro measurements). This comparative analysis aimed to evaluate the performance of the models and interpret the generated data. The outcomes demonstrated that the XGBoost method exhibited the highest performance scores for callus induction (CI%), regeneration efficiency (RE), and the number of plantlets (NP), with R2 scores explaining 38.3%, 73.8%, and 85.3% of the variances, respectively. Additionally, the RF algorithm explained 41.5% of the total variance and showcased superior efficacy in terms of embryogenic callus induction (ECI%). Furthermore, the SVM model, which provided the most robust statistics for responding embryogenic calluses (RECs%), yielded an R2 value of 84.1%, signifying its ability to account for a substantial portion of the total variance present in the data. In summary, this study exemplifies the application of diverse ML models to the cultivation of mature wheat embryos in the presence of various exogenous PAs and concentrations. Additionally, it explores the impact of polymorphic variations in the CRED–iPBS profile and DNA methylation on epigenetic changes, thereby contributing to a comprehensive understanding of these regulatory mechanisms.
Evaluation of the Effect of Conventional and Stabilized Nitrogen Fertilizers on the Nutritional Status of Several Maize Cultivars (Zea mays L.) in Critical Growth Stages Using Plant Analysis
2023, Szulc, Piotr, Krauklis, Daniel, Ambroży-Deręgowska, Katarzyna, Wróbel, Barbara, Zielewicz, Waldemar, Niedbała, Gniewko, Kardasz, Przemysław, Niazian, Mohsen
The study presents the results of a three year field trial aimed at assessing the nutritional status of maize in critical growth stages by means of a plant analysis in the cultivation of three maize cultivars differing in their agronomic and genetic profile. The main research problem was to demonstrate whether the availability of nitrogen from stabilized fertilizers for “stay-green” maize varieties is consistent with the dynamics of the demand for this component. This is very important from both the economic and agronomic aspect of maize cultivation. The research showed a significant response of the maize cultivars to different nitrogen fertilizer formulations, which was observed in the period from the five-leaf stage to the full flowering stage. The advantage of the fertilizer, UltraGran stabilo, over other nitrogen fertilizers in the BBCH 15 stage was demonstrated only for the cultivar, ES Metronom, which produced a greater aerial mass while maintaining the nitrogen concentration at the level of the other two maize cultivars. The nitrogen and potassium content shaped the kernel weight in the ear in the flowering stage, confirming the importance of the interaction of these two elements in forming this feature of maize as the main predictor of the grain yield. This trait (expressed by the R2 coefficient) manifested each year of the study, but especially in the years with optimal weather patterns (i.e., the first year). The response of the maize cultivars to nitrogen fertilizers, especially the cultivar, ES Metronom, was manifested by an increase in the content of nutrients and chlorophyll in the ear leaf, that is considered a predictive organ for grain yield. The fertilizers, Super N-46 and UltraGran stabilo, had a positive effect on the chlorophyll content (CCI parameter) and increased its efficiency of excitation energy transfer (the F0 parameter).
Absorpcja wielopierścieniowych węglowodorów aromatycznych (WWA) przez produkty spożywcze podczas wędzenia
2024, Nizio, Edyta, Czwartkowski, Kamil, Niedbała, Gniewko, Golimowski, Wojciech, Bochniak, Marta, Książek, Ewelina, Marcinkowski, Damian, Decka-Cywińska, Ewa
Integrative approaches to enhance reproductive resilience of crops for climate-proof agriculture
2025, Agho, Collins, Avni, Adi, Bacu, Ariola, Bakery, Ayat, Balazadeh, Salma, Baloch, Faheem Shehzad, Bazakos, Christos, Čereković, Nataša, Chaturvedi, Palak, Chauhan, Harsh, De Smet, Ive, Dresselhaus, Thomas, Ferreira, Liliana, Fíla, Jan, Fortes, Ana M., Fotopoulos, Vasileios, Francesca, Silvana, García-Perez, Pascual, Gong, Wen, Graci, Salvatore, Granell, Antonio, Gulyás, Andrea, Hidvégi, Norbert, Honys, David, Jankovska-Bortkevič, Elžbieta, Jonak, Claudia, Jurkonienė, Sigita, Kaiserli, Eirini, Kanwar, Meenakshi, Kavas, Musa, Koceska, Natasa, Koceski, Saso, Kollist, Hannes, Lakhneko, Olha, Lieberman-Lazarovich, Michal, Lukić, Nataša, Luyckx, Adrien, Mellidou, Ifigeneia, Mendes, Marta, Miras-Moreno, Begoña, Mirmazloum, Iman, Mladenov, Velimir, Mozafarian, Maryam, Mueller-Roeber, Bernd, Mühlemann, Joëlle, Munaiz, Eduardo D., Niedbała, Gniewko, Nieto, Cristina, Niinemets, Ülo, Papa, Stela, Pedreño, Maria, Piekutowska, Magdalena, Provelengiou, Stella, Quinet, Muriel, Radanović, Aleksandra, Resentini, Francesca, Rieu, Ivo, Rigano, Maria Manuela, Robert, Hélène S., Rojas, Laura I., Šamec, Dunja, Santos, Ana Paula, Schrumpfova, Petra P., Shalha, Boushra, Simm, Stefan, Spanic, Valentina, Stahl, Yvonne, Šućur, Rada, Vlachonasios, Κonstantinos E., Vraggalas, Stavros, Vriezen, Wim H., Wojciechowski, Tomasz, Fragkostefanakis, Sotirios
Prediction of Pea (Pisum sativum L.) Seeds Yield Using Artificial Neural Networks
2023, Hara, Patryk, Piekutowska, Magdalena, Niedbała, Gniewko
A sufficiently early and accurate prediction can help to steer crop yields more consciously, resulting in food security, especially with an expanding world population. Additionally, prediction related to the possibility of reducing agricultural chemistry is very important in an era of climate change. This study analyzes the performance of pea (Pisum sativum L.) seed yield prediction by a linear (MLR) and non-linear (ANN) model. The study used meteorological, agronomic and phytophysical data from 2016–2020. The neural model (N2) generated highly accurate predictions of pea seed yield—the correlation coefficient was 0.936, and the RMS and MAPE errors were 0.443 and 7.976, respectively. The model significantly outperformed the multiple linear regression model (RS2), which had an RMS error of 6.401 and an MAPE error of 148.585. The sensitivity analysis carried out for the neural network showed that the characteristics with the greatest influence on the yield of pea seeds were the date of onset of maturity, the date of harvest, the total amount of rainfall and the mean air temperature.
GT Biplot and Cluster Analysis of Barley (Hordeum vulgare L.) Germplasm from Various Geographical Regions Based on Agro-Morphological Traits
2024, Güngör, Hüseyin, Türkoğlu, Aras, Çakır, Mehmet Fatih, Dumlupınar, Ziya, Piekutowska, Magdalena, Wojciechowski, Tomasz, Niedbała, Gniewko
Barley, an ancient crop, was vital for early civilizations and has historically been served as food and beverage. Today, it plays a major role as feed for livestock. Breeding modern barley varieties for high yield and quality has created significant genetic erosion. This highlights the importance of tapping into genetic and genomic resources to develop new improved varieties that can overcome agricultural bottlenecks and increase barley yield. In the current study, 75 barley genotypes were evaluated for agro-morphological traits. The relationships among these traits were determined based on genotype by trait (GT) biplot analysis for two cropping years (2021 and 2022). This study was designed as a randomized complete block experiment with four replications. The variation among genotypes was found to be significant for all traits. The correlation coefficient and GT biplot revealed that grain yield (GY) was positively correlated with the number of grains per spike (NGS), the grain weight per spike (GW), and the thousand kernel weight (1000 KW). However, the test weight (TW) was negatively correlated with the heading date (HD). Hierarchical analysis produced five groups in the first year, four groups in the second year, and four groups over the average of two years. Genotypes by trait biplot analysis highlighted G25, G28, G61, G73, and G74 as promising high-yielding barley genotypes. This study demonstrated the effectiveness of the GT biplot as a valuable approach for identifying superior genotypes with contrasting traits. It is considered that this approach could be used to evaluate the barley genetic material in breeding programs.